| 1 | The Boy and the Heron | $46,832,867 | – | 2023 |
| 2 | Jujutsu Kaisen: Execution | $16,578,384 | – | 2025 |
| 3 | Weathering with You | $8,056,636 | – | 2020 |
| 4 | Princess Mononoke | $6,848,355 | – | 2025 |
| 5 | Dan Da Dan: Evil Eye | $5,597,050 | – | 2025 |
| 6 | Belle | $4,018,313 | – | 2022 |
| 7 | Shin Godzilla | $4,017,508 | – | 2025 |
| 8 | Colorful Stage! The Movie: A Miku Who Can't Sing | $3,661,284 | – | 2025 |
| 9 | Jujutsu Kaisen: Hidden Inventory / Premature Death - The Movie | $3,247,600 | – | 2025 |
| 10 | Shaun the Sheep: The Beast of Mossy Bottom | $3,081,755 | – | 2026 |
| 11 | Your Name. | $2,703,691 | – | 2026 |
| 12 | Kiki's Delivery Service | $2,697,212 | – | 2026 |
| 13 | Promare | $2,529,324 | – | 2021 |
| 14 | Mary and the Witch's Flower | $2,418,404 | $348,475 | 2018 |
| 15 | Look Back | $2,002,270 | – | 2024 |
| 16 | Perfect Blue | $1,725,193 | – | 2025 |
| 17 | Promare | $1,349,196 | $109,085 | 2019 |
| 18 | The First Slam Dunk | $1,291,869 | – | 2023 |
| 19 | Neon Genesis Evangelion: The End of Evangelion | $1,275,927 | – | 2024 |
| 20 | Mobile Suit Gundam GQuuuuuuX: Beginning | $1,221,246 | – | 2025 |
| 21 | Neon Genesis Evangelion: The End of Evangelion | $1,139,944 | – | 2026 |
| 22 | Kokuho | $1,118,645 | – | 2025 |
| 23 | DAN DA DAN: First Encounter | $1,051,181 | – | 2024 |
| 24 | From Up on Poppy Hill | $1,002,895 | $57,585 | 2013 |
| 25 | Angel's Egg | $862,717 | – | 2025 |
| 26 | Song of the Sea | $857,522 | $21,910 | 2014 |
| 27 | Mirai | $812,794 | $63,325 | 2018 |
| 28 | Kahlil Gibran's The Prophet | $725,489 | $27,435 | 2015 |
| 29 | The Tale of The Princess Kaguya | $703,232 | $54,915 | 2014 |
| 30 | All You Need Is Kill | $695,210 | – | 2026 |
| 31 | The Secret of Kells | $676,775 | $39,826 | 2010 |
| 32 | When Marnie Was There | $561,085 | $27,388 | 2015 |
| 33 | The Colors Within | $555,789 | – | 2025 |
| 34 | Fireworks (2018) | $525,280 | $138,014 | 2018 |
| 35 | Only Yesterday (2016 re-release) | $453,243 | $14,970 | 2016 |
| 36 | Perfect Blue (2018 re-release) | $445,824 | – | |
| 37 | Night Is Short, Walk On Girl | $406,490 | $18,302 | 2018 |
| 38 | Hard Boiled | $382,686 | – | 2026 |
| 39 | The Legend of Hei 2 | $355,187 | – | 2025 |
| 40 | Inu-Oh | $351,431 | – | 2022 |
| 41 | Chico & Rita | $350,524 | $20,654 | 2012 |
| 42 | Revolutionary Girl Utena: The Adolescence of Utena | $349,003 | – | 2026 |
| 43 | The Breadwinner | $313,215 | $17,395 | 2017 |
| 44 | A Cat in Paris | $309,973 | $34,554 | 2012 |
| 45 | My Life as a Zucchini | $309,766 | $31,853 | 2017 |
| 46 | April and the Extraordinary World | $295,488 | $11,413 | 2016 |
| 47 | The Deer King | $291,056 | – | 2022 |
| 48 | The Secret World of Arrietty | $277,520 | – | 2026 |
| 49 | Ernest & Celestine | $262,075 | $13,078 | 2014 |
| 50 | Evangelion: Death (True)² & Rebirth | $244,672 | – | 2026 |