| 1 | Sword Art Online: The Movie - Ordinal Scale | $1,522,976 | $196,454 | 2017 |
| 2 | Boruto: Naruto the Movie | $919,651 | $380,419 | 2015 |
| 3 | A Silent Voice | $644,391 | $121,732 | 2017 |
| 4 | The Last - Naruto the Movie | $524,451 | $179,370 | 2015 |
| 5 | Sailor Moon R: The Movie | $452,053 | $253,490 | 2017 |
| 6 | Puella Magi Madoka Magica the Movie: Rebellion | $375,627 | $189,514 | 2013 |
| 7 | Yo-kai Watch: The Movie | $257,343 | – | 2016 |
| 8 | Digimon Adventure tri. | $190,581 | $163,005 | 2016 |
| 9 | Maquia: When the Promised Flower Blooms | $185,699 | $71,472 | 2018 |
| 10 | Puella Magi Madoka Magica the Movie | $180,440 | $62,340 | 2012 |
| 11 | Fullmetal Alchemist: The Sacred Star of Milos | $177,802 | $119,300 | 2012 |
| 12 | Evangelion: 3.0 You Can (Not) Redo | $174,945 | $110,825 | 2014 |
| 13 | Lupin the Third: The Castle of Cagliostro (2017 re-release) | $142,425 | – | 2017 |
| 14 | Memories of Tomorrow | $140,200 | $1,524 | 2007 |
| 15 | Evangelion 2.0: You Can (Not) Advance | $133,640 | $84,157 | 2011 |
| 16 | Anohana The Movie: The Flower We Saw That Day | $109,630 | $37,480 | 2014 |
| 17 | Evangelion 1.0 You Are (Not) Alone | $107,797 | $1,579 | 2009 |
| 18 | Penguin Highway | $104,567 | $22,833 | 2019 |
| 19 | Trigun: Badlands Rumble | $62,027 | $29,201 | 2011 |
| 20 | Love and Honor | $60,910 | $5,234 | 2008 |
| 21 | The Harimaya Bridge | $54,473 | $1,226 | 2010 |
| 22 | Road to Ninja - Naruto the Movie | $43,171 | $19,017 | 2014 |
| 23 | Liz and the Blue Bird | $40,609 | – | |
| 24 | Expelled from Paradise | $34,510 | $18,869 | 2014 |
| 25 | Tiger & Bunny The Movie: The Rising | $34,471 | $23,171 | 2014 |
| 26 | K:Missing Kings | $33,531 | – | 2014 |
| 27 | Short Peace | $22,862 | – | 2014 |
| 28 | The Wonderland | $22,798 | – | 2020 |
| 29 | Blue Exorcist The Movie | $21,796 | – | 2013 |
| 30 | Uzumasa Limelight | $19,597 | $10,090 | 2014 |
| 31 | Maquia: When the Promised Flower Blooms (Dubbed) | $18,203 | – | |
| 32 | Haikara-San: Here Comes Miss Modern | $16,572 | – | |
| 33 | Daytime Drinking | $4,970 | $389 | 2009 |
| 34 | What the Snow Brings | $4,816 | $1,570 | 2007 |